I don't think it is a problem with the kidney. If it's eliminating creatinine from your blood, that's good news.
Could it be a sign of another problem? I.e., you are not producing enough creatinine for some reason. I haven't heard of it before, but it does seem that there are conditions that cause low creatinine.
https://www.healthline.com/health/low-creatinine You should talk to your doctor about it.